Question: Why isn't HTseq on
gravatar for palmer.750
2.8 years ago by
palmer.7500 wrote:


I'm new to the public site. I was previously using a galaxy instance hosted on the Hypergator at University of Florida. For RNAseq analysis of Bacterial mRNA transcripts, we would use bowtie for illumina followed but HTseq to count the transcripts. For differential analysis I would upload the resulting tab delineated file into Degust for differential expression analysis. This seemed to work perfectly fine for my purpose. However, I have recently switched institutions and no long have access to the University of Florida's Galaxy instance. Can HTseq be added to the options? 




ADD COMMENTlink modified 2.8 years ago by Jennifer Hillman Jackson25k • written 2.8 years ago by palmer.7500
gravatar for Jennifer Hillman Jackson
2.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Setting up your own local or cloud Galaxy and installing the tools you want to work with is probably the right choice for you. This prior Q&A has the details: A: Best way to get more storage quota

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.8 years ago by Jennifer Hillman Jackson25k
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