I have a cluster/system configuration where the node running galaxy has no direct way to submit jobs onto a cluster (running PBSPro), but has ssh access to another node that does.
I hoped to be able to tunnel the qsub and qstat calls made by galaxy to the other node, by replacing the qsub and qstat commands on the galaxy node by a simple wrapper scrippt of the form
#!/bin/bash ssh cluser_node "qsub $@"
This seems to work by using qsub by hand, but I get strange errors about drmma initialization problems
Does Galaxy need more? than qsub and qstat?