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Question: Where To Get Indexes For Mapping Tools
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gravatar for Yury Bukhman
7.7 years ago by
Yury Bukhman • 140
Yury Bukhman • 140 wrote:
Hi, we have set up a Galaxy server for internal use.  We would like to provide indexes for NGS mapping tools for a set of organisms that are relevant to our research.  While bowtie has a repository of such indexes, other tools, e.g. bwa, don't seem to have one, so we have to build our own.  Is there a repository of pre-built indexes for all mapping tools supported by Galaxy somewhere? Thanks. Yury -- Yury V. Bukhman, Ph.D. Associate Scientist, Bioinformatics Great Lakes Bioenergy Research Center University of Wisconsin - Madison 445 Henry Mall, Rm. 513 Madison, WI 53706, USA Phone: 608-890-2680 Fax: 608-890-2427 Email: ybukhman@glbrc.wisc.edu
bwa alignment bowtie • 781 views
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modified 7.7 years ago by Nate Coraor ♦ 3.2k • written 7.7 years ago by Yury Bukhman • 140
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gravatar for Nate Coraor
7.7 years ago by
Nate Coraor ♦ 3.2k
United States
Nate Coraor ♦ 3.2k wrote:
Hi Yury, We are working on setting up a mirror of all of our reference data that will be accessible via rsync and possibly http. There'll be an announcement when this is available. --nate
ADD COMMENT • link written 7.7 years ago by Nate Coraor ♦ 3.2k
Thanks, Nate!  I think this would be a very useful resource. Yury -- Yury V. Bukhman, Ph.D. Associate Scientist, Bioinformatics Great Lakes Bioenergy Research Center University of Wisconsin - Madison 445 Henry Mall, Rm. 513 Madison, WI 53706, USA Phone: 608-890-2680 Fax: 608-890-2427 Email: ybukhman@glbrc.wisc.edu
ADD REPLY • link written 7.7 years ago by Yury Bukhman • 140
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