Adding reference genomes to local instance of Galaxy

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Question: Adding reference genomes to local instance of Galaxy

3.7 years ago by

gkuffel22 • 170

United States

gkuffel22 • 170 wrote:

Hi,

We have a local instance of Galaxy set up on our computing cluster. We would like to rsync the same exact data (reference genome sequence data, indexes used by tools, etc) that is used on the public Main Galaxy instance. Is there a method to install all of the reference genomes and associated files at once or do we need to download the directory for each genome separately. Thank you for your help.

rsync galaxy local genomes • 1.4k views

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modified 3.7 years ago by Martin Čech ♦♦ 4.9k • written 3.7 years ago by gkuffel22 • 170

3.7 years ago by

Martin Čech ♦♦ 4.9k

United States

Martin Čech ♦♦ 4.9k wrote:

A good start is to see the following page: https://wiki.galaxyproject.org/Admin/UseGalaxyRsync

Galaxy provides rsync server for you to use freely and to obtain something Main does not have you can install and run special kind of tools that will build the reference for you, the Data Managers: https://wiki.galaxyproject.org/Admin/Tools/DataManagers

ADD COMMENT • link written 3.7 years ago by Martin Čech ♦♦ 4.9k

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