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• How to configure Galaxy to fix the error: fastq-dump-paired tool can't fetch SRA file from accession number?
  How to configure Galaxy to fix the error: fastq-dump-paired tool can't fetch SRA file from access...
• NCBI SRA Tool Importer can't import a list
  I am having trouble importing lists of SRA accession numbers using the NCBI SRA Tools. I am using...
• fastq-dump on Galaxy?
  Hello, I'm just getting my hands on Galaxy. I imported local .sra files as my starting data, but...
• extract reads with fastq-dump tool
  I'm trying to extract reads from sra files but it says that one of the files is a new dataset and...
• Extract reads in FASTQ/A format from NCBI SRA
  Hi. I downloaded an SRA accession. In the results, the spots were separated but is in the same fi...
• Poor overall alignment rates
  I am having problems with the alignment process for some data that I obtained through NCBI GEO da...
• trimgalore on interleaved paired-end fastq files
  Hi, I'm analyzing interleaved paired-end fastq files downloaded via fastq-dump. I am trying to r...
• Fastq-Dump On Sra Files From Ncbi
  Is it possible to upload files from the NCBI sra data base, then use fastq-dump from the sra tool...
• No Galaxy Links in EBI SRA - Now what?
  I am trying to import SRA data (SRR1725164) to Galaxy using the Get Data > EBI SRA tool.  Howe...
• Help! I'm using trimmomatic in Galaxy, but it doesn't recognize a part of input dataset.
  I'm using Trimmomatic to trimming paired end reads. When I set "Single-end or paired-end reads?"...
• Fastq Joiner
  I am trying to join two groomed fastq files from a paired-end Illumina read using the fastq joine...
• Sra Files On Galaxy
  Greetings Galaxy team, Are there any plans for Galaxy to be able to deal with SRA files? NCBI no...
• Error from HISAT2 when using fasta data retrieved from Get Data: EBI SRA
  I have uploaded files from EBI then I run the HIST with the following setting Source for the re...
• How to create and run a pipeline using BioBlend and Galaxy API?
  I need to build the following pipeline: 1. Upload an SRA file from a remote FTP server (with an...
• Initial Qc And Grooming For Illumina Hiseq2000 Paired End Rnaseq Data
  I am trying to do RNAseq analysis on Paired end data from the Hiseq2000. I have about 50 files f...
• Warning Message
  I'm having issues with the FASTQ_Groomer. What I have done it first I downloaded an SRA file crea...
• What is the correct regular expression for replacing inconsistent sequence and quality identifiers?
  Hello, I am trying to analyze RNA-Sequence data. The SRA accession number for the file that I am...