Question: Fastq-Dump On Sra Files From Ncbi
gravatar for Murphy, Theresa
5.5 years ago by
Murphy, Theresa20 wrote:
Is it possible to upload files from the NCBI sra data base, then use fastq-dump from the sra toolit within galaxy? If not, could these tools be added? The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
galaxy • 2.3k views
ADD COMMENTlink modified 5.5 years ago by Jennifer Hillman Jackson25k • written 5.5 years ago by Murphy, Theresa20
gravatar for Jennifer Hillman Jackson
5.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello, Have you seen the tool ' Get Data -> ENA SRA"? Once a project is searched for, you will find direct links to import the FASTQ data direct into Galaxy. Both the original submitted and the processed archive format in many cases. Best, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training
ADD COMMENTlink written 5.5 years ago by Jennifer Hillman Jackson25k

Yes thanks . it worked .

ADD REPLYlink written 19 months ago by salimy0
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