Question: RNASEQ analysis on genome not in database
gravatar for rehe
2.3 years ago by
rehe0 wrote:

I need to do RNA seq analysis on viral genome that is not in database. Have mapped with Bowtie to the viral genome, but since there is no reference transcript to map to, how should i proceed.

rna-seq • 541 views
ADD COMMENTlink modified 2.3 years ago by Martin Čech ♦♦ 4.9k • written 2.3 years ago by rehe0

Is there an annotation of some sort for the viral genome? What sort of analysis are you trying to perform on the data?

ADD REPLYlink written 2.3 years ago by Devon Ryan1.9k
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