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• Storing Environment Variables for Predefined Environment Variables
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• QIIME availability on Galaxy Main?
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• QIIME: chimera removal after OTU picking using uclust
  I am using qiime for 16srRNA analysis. I used pick_open_reference_otus.py  with green genes as re...
• HTCondor & galaxy setup guide
  I am looking for a descriptive tutorial on setting up a galaxy environment using htcondor as the ...
• Special Character $ Gets Converted To X In Tool
  Hi, In a test tool that I am working on, I need to enter text preceded by a $ sign to be interpr...
• Interactive environment: Docker can't access Galaxy
  Hi, I am running Galaxy in my local computer. It is accessible from `localhost:8080` When I am ...
• Qiime file not found error
  Hi, I integrated Qiime into Galaxy using the qiime-galaxy integration ( https://github.com/qiime...
• QIIME Virtual Box to LEfSe input
  I have done analysis using QIIME Virtual Box, how can i use QIIME output for LEfSe input?
• "Count.seqs" not running
  Hello, I am getting this error "TERM environment variable not set" when running toolshed.g2.bx.ps...
• my tools don't locate module install by conda in mulled environement
  Hello, i have a local instance of galaxy and have some perl tools in it . I am constrain to prec...
• Grabbing environment variables from previously added tools for new tool installation
  Hello Galaxy, I am currently working on automatic installation for DELLY. DELLY has 3 major dep...
• align.seq mothur error
  Hi. i am new to galaxy. i'm trying to align my NGS samples based on galaxy 16s Microbial Analysis...
• Where can I find the Trinity statistics?
  Hi, This is maybe a stupid question, but I am new to RNA sequencing and the Galaxy environment -...
• Lastz Very Slow
  Hi - is there a reason Lastz is very slow right now? I am mapping 2-3,000, reads against a single...
• Use of Galaxy on local computer
  Hello everyone, I am very new to command environment and dont have any knowledge about operating...
• Installing Galaxy On My Computer
  Hi, I am a new user of Galaxy. I want to analyze whole human exome data with Galaxy and cannot up...
• Mac coding environment / Run Planemo and Galaxy under Linux...(Docker?)
  Hi! I am writing tools and workflows for Galaxy. I am under a Mac OSX. I found it quite challen...
• tool_dependencies.xml Not Working - Why?
  I am working on writing a Galaxy tool that will run the genome assembly tool BUSCO. I have found ...
• Galaxy Docker RStudio Interactive Environment not responding
  Hello, I have installed Galaxy Docker instance on my server. When I am trying to access RStudio ...
• Problem adding/checking a docker tool
  Hi, Newbie question. I am following the installation of tool that is running within a docker co...
• Issue with ${GALAXY_SLOTS} and SGE cluster
  Dear Galaxy Community, I have been trying to configure my job_conf.xml for a cluster usage. We a...
• Visualize gff3 file
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• RNA-seq analysis- HiSat2 and Cufflinks
  Hello, I am new with RNA-seq data analysis. I am using Cygwin software in order to create a Linu...