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Question: Keep getting "This is a new dataset and not all of its data are available yet"
0
gravatar for ms5168
2.5 years ago by
ms5168 • 0
ms5168 • 0 wrote:

Hi there,

I am keep getting the message "This is a new dataset and not all of its data are available yet". nothing is in the queue. It happened both in FASTQ Groomer and TopHat.

Is there anything wrong with the file?

Thank you in advance,

Moti

rna-seq tophat • 1.8k views
ADD COMMENT • link •
modified 16 months ago by megan_overton • 0 • written 2.5 years ago by ms5168 • 0
1
gravatar for Jennifer Hillman Jackson
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This state is a type of staging. The database has it in a queue but it has not been sent into the cluster queue. This is due to high server load. Data in this state can be treated like any other grey dataset - it is queued and the job should be allowed to complete without deleting/restarting.

Breaking down the different "grey - queued" datasets into more types is a topic the developers are considering to help make status clearer to understand.

https://wiki.galaxyproject.org/Support#Dataset_status_and_how_jobs_execute

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.5 years ago by Jennifer Hillman Jackson ♦ 25k

Thank you for your response, Jen.

You were right, the job was successfully completed after a while. However, I have another issue. I tried to run MAP with BWA and got the following error message: An error occurred with this dataset: Fatal error: Exit code 1 () (33, "HTTP server doesn't seem to support byte ranges. Cannot resume.”).

Any idea how to fix this?

Thanks again,

Moti

ADD REPLY • link written 2.5 years ago by ms5168 • 0

This follow-up question was not addressed (was missed). The error was server side, not a tool problem.

For others, it is always best to start a new thread for new questions. Prior questions that add context can be linked.

ADD REPLY • link written 19 months ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for megan_overton
16 months ago by
megan_overton • 0
megan_overton • 0 wrote:

My data has still not run, its still grey. Its been a day.

I was trying to run Cuffdiff over one cuffmerge data and 2 tophat datas

Help?
ADD COMMENT • link written 16 months ago by megan_overton • 0
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