Question: gene names from ucsc id
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gravatar for 1603.neha
2.2 years ago by
1603.neha70
1603.neha70 wrote:

i have cufflink and cuffdiff output. i want gene names in ncbi ids and a tabulated format. i can visualize them in IGV but how to export the data in text or tabulated format

mapping tophat rnaseq cuffdiff • 814 views
ADD COMMENTlink modified 2.2 years ago by Jennifer Hillman Jackson25k • written 2.2 years ago by 1603.neha70
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gravatar for Jennifer Hillman Jackson
2.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Tools in the group Text Manipulation can be used to isolate data columns, manipulate the format of content, remove header lines, and the like.

The assumption is that you used a reference annotation file containing the appropriate attributes when running these tools. If you didn't, consider that option. One source: http://support.illumina.com/sequencing/sequencing_software/igenome.html

There are ways to map UCSC transcript IDs to other identifiers, but this is not the most direct method.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.2 years ago by Jennifer Hillman Jackson25k
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