Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: htseq and cufflinks
0
gravatar for s.good
3.0 years ago by
s.good • 0
Canada
s.good • 0 wrote:

Hi,

I have used HTSeq to count the no of mapped reads, the HTSeq gives me the ensemble ids but when i check these ensemble ids in cufflinks some of them have gene names.

Kindly advise is it possible to link two files and get one file with ensemble ids and gene names. I WANT TO MERGE MY HTSEQ output With Cufflinks assembled transcript files to get the gene names .

 

 

Thanks

 

Regards

 

Nisha
cufflinks gene name htseq output • 1.5k views
ADD COMMENT • link •
modified 3.0 years ago by kanika.151 • 0 • written 3.0 years ago by s.good • 0
0
gravatar for kanika.151
3.0 years ago by
kanika.151 • 0
kanika.151 • 0 wrote:

Hi,

Can you please mention your command that you have used to get the HTSeq output?
ADD COMMENT • link written 3.0 years ago by kanika.151 • 0
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 172 users visited in the last hour