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Question: Chromosome alignment to generate MAF file
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gravatar for h.stotz
2.5 years ago by
h.stotz • 20
European Union
h.stotz • 20 wrote:

Hello,

Can I do a chromosome alignment or do I need to use other softward like LASTZ, LAST or MUMmer to generate a MAF file that I can then further analyse in Galaxy?

Thanks much,

Henrik
galaxy • 804 views
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modified 2.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.5 years ago by h.stotz • 20
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gravatar for Jennifer Hillman Jackson
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

As far as I know, the complete process to generate an entire multi-genome alignment, such as what the Conservation track from UCSC represents (and the derivative MAF/Liftover data), has not been converted into a Galaxy workflow. Some tools are wrapped, others have not been.

This has been of interest for some time and others are welcome to comment and/or share more information.

Best, Jen, Galaxy team
ADD COMMENT • link written 2.5 years ago by Jennifer Hillman Jackson ♦ 25k
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