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Question: (Closed) STAR aligner generating genomes takes long time
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gravatar for xcalle91
3.0 years ago by
xcalle91 • 0
European Union
xcalle91 • 0 wrote:

Hi, I'm trying to use the STAR  ultrafast aligner, first I need to generate a genome to align to, so, as it is described in the manual I run this command line:

    /pathToStarDir/STAR --runMode genomeGenerate --genomeDir /path/to/GenomeDir --genomeFastaFiles /path/to/genome/*.fa --runThreadN 11

 

GenomeDir contains one fasta file for each human chromosome.

I started it yesterday morning and after 24 hours it does not finish yet...

I wondering if I did something wrong and is stack in a never ending point. I show few post with similar problems but they did not come out with a solution that works for me.

 

I doing it in a computer with 8 cores i7 3.60GHz and 31.3 of memory ram

Thanks in advantage

 
rna-seq star genome • 1.4k views
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written 3.0 years ago by xcalle91 • 0
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gravatar for Jennifer Hillman Jackson
3.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello xcalle91!

We believe that this post is does not fit the main topic of this site.

This question is about line-command tool usage. This forum is for Galaxy questions. Try https://www.biostars.org, http://seqanswers.com, http://scicomp.stackexchange.com, etc.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!
ADD COMMENT • link written 3.0 years ago by Jennifer Hillman Jackson ♦ 25k
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