Question: Problems with R tool
0
doja_07 • 0 wrote:
Hey. I'm trying to create a new tool in galaxy in R Here's my xml file
<tool id="PLS_1" name="PLS">
<command interpreter="bash"> r_script_wrapper.sh /home/chaymae/galaxy/tools/R_tools/PLS.R
$value $output </command>
<inputs>
<param name="value" label="data" type="tabular"/>
</inputs>
<outputs>
<data name="output" type="data" format="tabular"/>
</outputs></tool>
And here is my .R file
#!/usr/bin/Rscript
library(littler)
library(xlsx)
args <- commandArgs()
test<-read.xlsx(args[1], sheetIndex=1,colIndex=(c(4:5)),header=TRUE)
But when i restart galaxy i don't see the tool in my tool list
ADD COMMENT
• link
•
modified 2.5 years ago
by
Hotz, Hans-Rudolf • 1.8k
•
written
2.5 years ago by
doja_07 • 0
