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Question: how to export cufflink and tophat result out of galaxy in word or excel
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2.6 years ago by
1603.neha • 70
1603.neha • 70 wrote:

hi i hav eperformed data grooming and qc. then mapping the reaads using tophat and assembly using cufflink. i want to know how can i export the output from galaxy in excel or word for some other analysis and also the fasta sequences of aligned reads.

output tophat rnaseq cufflink • 889 views
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modified 2.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.6 years ago by 1603.neha • 70
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gravatar for Jennifer Hillman Jackson
2.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Any dataset can be downloaded. Make sure the data is in readable tabular format, the most accepted transfer format for importing into text manipulation/editing software packages. For example, a compressed BAM dataset should be converted to SAM format ("BAM-to-SAM" in Galaxy or use Samtools line command).

How to download: https://wiki.galaxyproject.org/Support#Downloading_data

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.6 years ago by Jennifer Hillman Jackson ♦ 25k
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