Question: Tophat not recognizing the ref genome I loaded
0
gravatar for lhorb
20 months ago by
lhorb0
United States
lhorb0 wrote:

I am trying to run Tophat as I did in a previous analysis using the same ref genome. It is a fasta file that I uploaded as I did before. It is the exact same fasta file I uploaded before but it is not showing up as a ref from my own history in Tophat. What am I missing here?

Thank you.

tophat reference genome • 396 views
ADD COMMENTlink modified 20 months ago by Jennifer Hillman Jackson23k • written 20 months ago by lhorb0
0
gravatar for Jennifer Hillman Jackson
20 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Maybe the datatype needs to be set to "fasta"?

https://wiki.galaxyproject.org/Support#Tool_doesn.27t_recognize_dataset

Hope this helps but let us know if not, Jen, Galaxy team

ADD COMMENTlink written 20 months ago by Jennifer Hillman Jackson23k
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