Question: Tool error "OSError: [Errno 28] No space left on device"
gravatar for 1603.neha
2.6 years ago by
1603.neha70 wrote:

hi i have 1. taken sra files from ebi 2. fast q groomer 3. tophat i am getting error info url: job id: 12604972 (bbd44e69cb8906b5498919c36178e348) tool id: tool version: 0.9 job pid or drm id: None

job tool version: None

job command line:


job stderr:

job stdout:

job info:

failure preparing job

job traceback: Traceback (most recent call last): File "/cvmfs/", line 307, in __prepare_job remote_job_config =, tool.version) File "/cvmfs/", line 75, in setup return self.setup_handler.setup(setup_args) File "/cvmfs/", line 68, in setup return self.client.remote_setup(setup_args) File "/cvmfs/", line 13, in replacement response = func(args, kwargs) File "/cvmfs/", line 168, in remote_setup return self._raw_execute("setup", setup_args) File "/cvmfs/", line 218, in _raw_execute return self.job_manager_interface.execute(command, args, data, input_path, output_path) File "/cvmfs/", line 142, in execute result = action(args) File "/cvmfs/", line 47, in setup return __setup(manager, job_id, tool_id=tool_id, tool_version=tool_version, use_metadata=use_metadata) File "/cvmfs/", line 52, in __setup response = setup_job(manager, job_id, tool_id, tool_version, use_metadata) File "/cvmfs/", line 108, in setup_job job_id = manager.setup_job(job_id, tool_id, tool_version) File "/cvmfs/", line 60, in setup_job job_id = self._proxied_manager.setup_job(args, *kwargs) File "/cvmfs/", line 31, in setup_job return self._setup_job_for_job_id(job_id, tool_id, tool_version) File "/cvmfs/", line 48, in _setup_job_for_job_id self._setup_job_directory(job_id) File "/cvmfs/", line 145, in _setup_job_directory job_directory.setup() File "/cvmfs/", line 278, in setup self._directory_maker.make(self.job_directory) File "/cvmfs/", line 397, in make os.mkdir(makedir_args) OSError: [Errno 28] No space left on device: '/jetstream/tacc-scratch0/main/jobs/12604972'.

please help

ADD COMMENTlink modified 2.6 years ago by Jennifer Hillman Jackson25k • written 2.6 years ago by 1603.neha70
gravatar for Jennifer Hillman Jackson
2.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Please re-run the job. There were some cluster issues over the weekend through mid-day yesterday.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.6 years ago by Jennifer Hillman Jackson25k
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