Hi, I try to create or edit a workflow but it returned the message
"Internal Server Error
Galaxy was unable to successfully complete your request"
As I suspected a problem with the downloaded workflow.ga, I imported a the TestWorkflow1 from the test/base/data Galaxy folder, but the problem is the same ending with the message
Error - <type 'exceptions.attributeerror'="">: 'module' object has no attribute '_magic_number'
I am using the latest Galaxy version.
My log is below.
Thanks for helping!
127.0.0.1 - - [24/juil./2017:13:45:29 +0200] "GET /api/webhooks/masthead/all HTTP/1.1" 200 - "http://localhost:8080/workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" 127.0.0.1 - - [24/juil./2017:13:45:33 +0200] "GET /workflow/import_workflow HTTP/1.1" 200 - "http://localhost:8080/workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" 127.0.0.1 - - [24/juil./2017:13:45:33 +0200] "GET /api/webhooks/masthead/all HTTP/1.1" 200 - "http://localhost:8080/workflow/import_workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" /xxx/galaxy/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/relationships.py:1404: SAWarning: Got None for value of column workflow_step.id; this is unsupported for a relationship comparison and will not currently produce an IS comparison (but may in a future release) "(but may in a future release)" % column) /xxx/galaxy/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/relationships.py:1404: SAWarning: Got None for value of column stored_workflow.id; this is unsupported for a relationship comparison and will not currently produce an IS comparison (but may in a future release) "(but may in a future release)" % column) 127.0.0.1 - - [24/juil./2017:13:49:26 +0200] "POST /workflow/import_workflow HTTP/1.1" 200 - "http://localhost:8080/workflow/import_workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" 127.0.0.1 - - [24/juil./2017:13:49:27 +0200] "GET /api/webhooks/masthead/all HTTP/1.1" 200 - "http://localhost:8080/workflow/import_workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" /xxx/galaxy/.venv/local/lib/python2.7/site-packages/sqlalchemy/sql/elements.py:3795: SAWarning: Textual SQL expression u'stored_workflow_id=6' should be explicitly declared as text(u'stored_workflow_id=6') (this warning may be suppressed after 10 occurrences) {"expr": util.ellipses_string(element)}) 127.0.0.1 - - [24/juil./2017:13:49:36 +0200] "GET /workflow/display_by_id?id=a799d38679e985db HTTP/1.1" 200 - "http://localhost:8080/workflow/import_workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" 127.0.0.1 - - [24/juil./2017:13:49:37 +0200] "GET /api/webhooks/masthead/all HTTP/1.1" 200 - "http://localhost:8080/workflow/display_by_id?id=a799d38679e985db" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" 127.0.0.1 - - [24/juil./2017:13:49:54 +0200] "GET /workflow HTTP/1.1" 200 - "http://localhost:8080/workflow/display_by_id?id=a799d38679e985db" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" 127.0.0.1 - - [24/juil./2017:13:49:55 +0200] "GET /api/webhooks/masthead/all HTTP/1.1" 200 - "http://localhost:8080/workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" 127.0.0.1 - - [24/juil./2017:13:49:56 +0200] "GET /workflow/editor?id=a799d38679e985db HTTP/1.1" 500 - "http://localhost:8080/workflow" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:54.0) Gecko/20100101 Firefox/54.0" Error - <type 'exceptions.attributeerror'="">: 'module' object has no attribute '_magic_number' URL: http://localhost:8080/workflow/editor?id=a799d38679e985db File '/xxx/galaxy/lib/galaxy/web/framework/middleware/error.py', line 154 in __call__ app_iter = self.application(environ, sr_checker) File '/xxx/galaxy/.venv/local/lib/python2.7/site-packages/paste/recursive.py', line 85 in __call__ return self.application(environ, start_response) File '/xxx/galaxy/.venv/local/lib/python2.7/site-packages/paste/httpexceptions.py', line 640 in __call__ return self.application(environ, start_response) File '/xxx/galaxy/lib/galaxy/web/framework/base.py', line 135 in __call__ return self.handle_request( environ, start_response ) File '/xxx/galaxy/lib/galaxy/web/framework/base.py', line 214 in handle_request body = method( trans, *kwargs ) File '/xxx/galaxy/lib/galaxy/web/framework/decorators.py', line 74 in decorator return func( self, trans, *args, *kwargs ) File '/xxx/galaxy/lib/galaxy/webapps/galaxy/controllers/workflow.py', line 673 in editor return trans.fill_template( "workflow/editor.mako", workflows=workflows, stored=stored, annotation=self.get_item_annotation_str( trans.sa_session, trans.user, stored ) ) File '/xxx/galaxy/lib/galaxy/web/framework/webapp.py', line 891 in fill_template return self.fill_template_mako( filename, *kwargs ) File '/xxx/galaxy/lib/galaxy/web/framework/webapp.py', line 899 in fill_template_mako template = template_lookup.get_template( filename ) File '/xxx/galaxy/.venv/local/lib/python2.7/site-packages/mako/lookup.py', line 253 in get_template return self._load(srcfile, uri) File '/xxx/galaxy/.venv/local/lib/python2.7/site-packages/mako/lookup.py', line 318 in _load *self.template_args) File '/xxx/galaxy/.venv/local/lib/python2.7/site-packages/mako/template.py', line 322 in __init__ module = self._compile_from_file(path, filename) File '/xxx/galaxy/.venv/local/lib/python2.7/site-packages/mako/template.py', line 381 in _compile_from_file if module._magic_number != codegen.MAGIC_NUMBER: AttributeError: 'module' object has no attribute '_magic_number'
