Question: Deep tools : package_python_2_7_bx_python_0_7 error
0
gravatar for christophe.habib
2.6 years ago by
France
christophe.habib340 wrote:

Hello,

I am trying to install deep tools from toolshed. But I have this error

bx-python 0.7.2 package Error
Downloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.35.tar.gz
Traceback (most recent call last):
File "setup.py", line 9, in <module>
use_setuptools()
File "/data/GalaxyData/Formation/database/tmp/tmp-toolshed-mtdOdKO7H/bx-python-0.7.2/distribute_setup.py", line 152, in use_setuptools
return _do_download(version, download_base, to_dir, download_delay)
File "/data/GalaxyData/Formation/database/tmp/tmp-toolshed-mtdOdKO7H/bx-python-0.7.2/distribute_setup.py", line 131, in _do_download
to_dir, download_delay)
File "/data/GalaxyData/Formation/database/tmp/tmp-toolshed-mtdOdKO7H/bx-python-0.7.2/distribute_setup.py", line 201, in download_setuptools
src = urlopen(url)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 154, in urlopen
return opener.open(url, data, timeout)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 437, in open
response = meth(req, response)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 550, in http_response
'http', request, response, code, msg, hdrs)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 469, in error
result = self._call_chain(*args)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 409, in _call_chain
result = func(*args)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 656, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 431, in open
response = self._open(req, data)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 454, in _open
'unknown_open', req)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 409, in _call_chain
result = func(*args)
File "/home/galaxy/Formation/galaxy/dependencies/python/2.7.10/iuc/package_python_2_7_10/0339c4a9b87b/lib/python2.7/urllib2.py", line 1265, in unknown_open
raise URLError('unknown url type: %s' % type)
urllib2.URLError: <urlopen error unknown url type: https>
view raw deep tools hosted with ❤ by GitHub

I guess the simple solution would be to download the package (done) and to change the URL to the path of the archive. How can I do that ? Otherwise if you know how to fix this bug I would be glad to do it properly !

Thank you.

urllib2 bx_python deep tools • 753 views
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by christophe.habib340

can you please paste the error you are getting? thanks

ADD REPLYlink written 2.6 years ago by Martin Čech ♦♦ 4.9k

Ofc, sorry i didn't paste the good link!

ADD REPLYlink written 2.6 years ago by christophe.habib340

Chris, can you try again please. It seems you can not fetch this URL http://pypi.python.org/packages/source/d/distribute/distribute-0.6.35.tar.gz but it is accessible. Any network issues on your end? Is this the latest deeptools version?

ADD REPLYlink written 2.6 years ago by Bjoern Gruening5.1k
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