Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Ngs: Copy Number Modules?
0
gravatar for Richard Park
8.0 years ago by
Richard Park • 10
Richard Park • 10 wrote:
Hi Everyone, I'm new to Galaxy and was just wondering if there are any modules for copy number analysis for NGS data? Thanks, Richard Park
galaxy • 504 views
ADD COMMENT • link •
modified 8.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 8.0 years ago by Richard Park • 10
0
gravatar for Jennifer Hillman Jackson
8.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Richard, Galaxy has tools that cover most steps, start to finish, for this type of analysis. These can be bundled into workflows for use on our main instance or your own (including for use with in-house clusters or external clouds). Which tools are the best fit will depend on the exact data type you are inputting and whether genomic regions, complete transcripts/genes, or SNPs are the final CNV targets. Start here for help that can get you oriented: http://main.g2.bx.psu.edu/u/james/p/exercises If/when you have a question about a tool or workflow, be sure to let us know and we can offer more specific help, Thanks! Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org
ADD COMMENT • link written 8.0 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 147 users visited in the last hour