Question: Import Repository Capsule Error on Private Toolshed
gravatar for mccoykg
2.7 years ago by
United States
mccoykg80 wrote:

Hi all! I'm trying to import bowtie 0.12.7 and biopython 1.65 from repository capsules to a private toolshed, but both are giving me the same error. For reference I'm just downloading their tar.gz files from the main toolshed and using the "Import Repository Capsule" tool to try to import them. I've copied the biopython error below:

Module galaxy.web.framework.middleware.error:149 in __call__

app_iter = self.application(environ, sr_checker) Module paste.debug.prints:106 in __call__ environ, Module paste.wsgilib:543 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:133 in __call__ return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:191 in handle_request body = method( trans, *kwargs ) Module galaxy.webapps.tool_shed.controllers.repository:3153 in upload_capsule capsule_dict = irm.validate_capsule( *capsule_dict ) Module tool_shed.capsule.capsule_manager:886 in validate_capsule export_info_tree, error_message = xml_util.parse_xml( export_info_file_path ) Module tool_shed.util.xml_util:117 in parse_xml fobj = open( file_name, 'r' ) IOError: [Errno 2] No such file or directory: '/tmp/tmp-capsule-ecf_8z21m/package_biopython_1_65-030f1a505d40/export_info.xml'

Any ideas on how to fix this?

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