Question: bwa not recognizing fastq files
0
tkirkland • 0 wrote:
I am trying to map a set of fastq sequences to a custom genome, using BWA. The two setrs of triplicates are in a collection and I have run groomer on them. to convert to fastqsanger. When I try to run BWA (or BWA-mem), I get the error "No set or collection of fastqsanger availabl". Olease help - I don't know what I am doing wrong.
Thanks
Theo
will BWA recognise them if you do not use the collection approach ?
Are you using Galaxy at http://usegalaxy.org? Please be specific about where you are using Galaxy if elsewhere. Note the public server by URL or if Cloudman is in use or if a local is in use (what Galaxy version and BWA tool version, please). Thanks! Jen, Galaxy team