Question: Count intervals in one file overlapping intervals in another file -No longer available?
0
gravatar for tymiller
2.7 years ago by
tymiller60
United States
tymiller60 wrote:

Hi, 

I have used the 'Count intervals in one file overlapping intervals in another file' tool from BedTools many times now and it works great to calculate the RPKM values for loci in ChIP-seq data.  However, it no longer seems to be available on the UseGalaxy Instance.  Is this correct? Did something replace it that can also do its function?

Thanks,
Ty 

bedtools • 559 views
ADD COMMENTlink modified 2.7 years ago by Jennifer Hillman Jackson25k • written 2.7 years ago by tymiller60
0
gravatar for Jennifer Hillman Jackson
2.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This tool suite was updated and some of the tool names changed (plus there are new tools added). Intersect interval files (Galaxy Version 2.22.0) is probably what you are looking for.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.7 years ago by Jennifer Hillman Jackson25k
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