Question: what features are counted by 'compute both depth and breadth'?
gravatar for c.zijlstra
2.1 years ago by
c.zijlstra0 wrote:

I used the bed tool Compute both depth and breadth of coverage', but it is not clear to me whether output lists number of nucleotides or number of alignments that overlap an interval. Can someone please explain this?

Kind regards, carla

galaxy • 462 views
ADD COMMENTlink modified 2.1 years ago by Jennifer Hillman Jackson25k • written 2.1 years ago by c.zijlstra0
gravatar for Jennifer Hillman Jackson
2.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


This is the number of alignments and partial alignments combined. Partial alignments are given a score based on coverage of the target interval, as a fraction. The manual explains this in more detail if interested.

Related to:

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.1 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 186 users visited in the last hour