Question: Papio Anubis 2.0 genome annotation
0
gravatar for brian.hermann
2.5 years ago by
United States
brian.hermann40 wrote:

Hello,

I was wondering if there was a possibility of adding the papAnu_2.0 annotation as a built-in genome for gene expression tools such as TopHat. Thanks very much for considering this request.  

Best,

Brian

baboon built-in genome galaxy • 516 views
ADD COMMENTlink modified 2.5 years ago by Jennifer Hillman Jackson25k • written 2.5 years ago by brian.hermann40
0
gravatar for Jennifer Hillman Jackson
2.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Yes, this is an important addition. I have added to the list here (where you can also track progress): https://github.com/galaxyproject/galaxy/issues/1470

Until published, the genome can be retrieved from UCSC and used as a custom reference genome. This is how: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Thanks for the input! Jen, Galaxy team

 

ADD COMMENTlink written 2.5 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 109 users visited in the last hour