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Question: How to group 4 bowtie files to visualise altogether from galaxy in UCSC genome browser?
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gravatar for rajesh.somasundaram19
15 months ago by
rajesh.somasundaram19 • 0
rajesh.somasundaram19 • 0 wrote:

Hi, How to group 4 bowtie files to visualise altogether from galaxy in UCSC genome browser?

Thank you, Regards, Raj
bowtie group • 317 views
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modified 15 months ago by Jennifer Hillman Jackson ♦ 25k • written 15 months ago by rajesh.somasundaram19 • 0
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gravatar for Jennifer Hillman Jackson
15 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Three choices:

1 - Merge the BAMs together with NGS: SAMtools > Merge BAM Files

2 - Load the BAMs as tracks at UCSC, then group them together into a track hub. See the help at UCSC for how to do this. If you have trouble, UCSC support can help with the specifics through though their google group. http://genome.ucsc.edu >> http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html

3 - Consider viewing the data within Galaxy's visualization tool Trackster. Dataset tracks can be dragged into groups and external tracks can be loaded into Galaxy and viewed along with Galaxy natively generated data.

Hope this helps!
ADD COMMENT • link written 15 months ago by Jennifer Hillman Jackson ♦ 25k
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