Question: Cannot load bedgraph or wig file on UCSC browser
0
gravatar for sanjit.mukherjee
2.3 years ago by
sanjit.mukherjee0 wrote:

I am trying to visualize the Wiggle, bedgraph or bam files  from Galaxy to the UCSC browser directly. the BED files are working fine. Any idea about this ?

wiggle ucsc bedgraph bam • 697 views
ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by sanjit.mukherjee0
0
gravatar for Jennifer Hillman Jackson
2.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Is the database attribute assigned? Click on then pencil icon per-dataset to do this. It must be a match for a UCSC hosted genome browser.

Also be sure to use this tool to compress before visualization: Wig/BedGraph-to-bigWig converter

Share more about the behavior seen if this does not resolve the issue.

Thanks, Jen, Galaxy team

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by Jennifer Hillman Jackson25k
0
gravatar for sanjit.mukherjee
2.3 years ago by
sanjit.mukherjee0 wrote:

Hi Jen,

Yes its assigned. When I am trying to view using display at 'UCSC main test' it says 'byte-range request was ignored by server'

I am trying it from the Galaxy/Cistrome

track load error (track name='ct_Uk5hmC_7783'):

ERROR: wigEncode: empty input file: 'stdin'

SM

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by sanjit.mukherjee0

If bigWig files are being denied at http://genome.ucsc.edu, I would contact the Cistrome server's admins and see if there is a connection problem. They can help sort out if the issue is with UCSC or on their side. Contact info is here: https://wiki.galaxyproject.org/PublicGalaxyServers

ADD REPLYlink written 2.3 years ago by Jennifer Hillman Jackson25k
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