Question: (Closed) Scaffold making via scripting
0
gravatar for d.angra
2.4 years ago by
d.angra50
United Kingdom
d.angra50 wrote:

Hi 

My question today is for experts using python programming to do Bioinformatic analyses. I am trying to run a  well written script for creating scaffold from my blast sequences. I am however getting the error again and again. I have pasted the error I am getting

 

""""Traceback (most recent call last):
  File "C:/Python27/DB/Attempt3.py", line 150, in <module>
    __main__()
  File "C:/Python27/DB/Attempt3.py", line 143, in __main__
    ContigsDict = myContigs (args.sequences)
  File "C:/Python27/DB/Attempt3.py", line 49, in myContigs  with open(file, "r") as f:

TypeError: coercing to Unicode: need string or buffer, NoneType found"""
 

 

Can somebody please advise me why I am getting his error.I know I have installed python and biopython as I am able to parse known sequences using this.

Regards

D

 

biopython • 457 views
ADD COMMENTlink written 2.4 years ago by d.angra50

Hello d.angra!

We believe that this post is does not fit the main topic of this site.

This forum is best at helping address questions about Galaxy. For general bioinformatics questions, try https://www.biostars.org or others.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 2.4 years ago by Jennifer Hillman Jackson25k
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