Hello,
I am trying to analyze ChIP-Seq data and extract enriched motifs from it. I have done the tabular to fasta conversions and sorted it based on length, I have also done the genomic features extraction. However, when I try to generate logo plots, either I get a message saying the lengths are not equal or the logo plots that are generated are completely empty. I am not quite sure what I am doing wrong at this point. Any help will be greatly appreciated. Is there a way to make the sequences all the same length? Thank you.
Best,
Uday