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• FASTA consensus from BWA-MEM mapped MinION data?
  Does anyone know how I can I generate a FASTA consensus from BWA-MEM MinION data using Galaxy?
• How to generate consensus sequence from a sorted and aligned to ref BAM file?
  Hello guys, I was trying to convert my 2 paired end fastq files to aligned sorted bam and I was s...
• Using the Extract Genomic DNA tool in Galaxy
  Hi everyone! So I am trying to use the the NGS: SAMtools function in galaxy to generate consensu...
• Creating consensus sequence after mapping
  Greetings, I would like to know how to create contigs, or DNA consensus sequence after mapping t...
• How to I add a genome to Database/Build?
  Hi! After pileup file generation and convertion of pileup to interval, potentially we could extra...
• Making concensus sequence
  Hi,  How can I make consensus sequence from Ion PGM reads as BAM format G.Toksoy
• Create and extract consensus sequence after initial genome mapping using a custom genome
  I have aligned fastq sequences (from an insect vector) to a small bacterial genome of 1.2 mb (as...
• How to create a pseudomolecule?
  Hello I am thankful to the galaxy team for providing a wonderful platform for analyses. I am usi...
• export consensus sequence
  Hi, I have been using Galaxy.org for a couple of months now. It is such a powerful platform. I ...
• Genbank Submission - How To Generate Fasta (Not Fastq) Files
  I still haven't found an easy solution to this problem and I am afraid I'm going to have to write...
• use HIV as reference genome
  hi, i have 4  read outs that cover the whole genome of HIV sequence. i want to align them to for...
• UCSC gene names
  I have uploaded a database of genes from the UCSC genome browser (Hg38) to Galaxy, to identify th...
• Pileup consensus not called correctly
  Hi, I want to extract a consensus sequence from an aligned BAM file, which was generated by alig...
• Error When Running Generate Pileup
  Hello, I am aligning Illumina paired end sequence using BWA, then run SAM-to- BAM resulting in a...
• Fasta Generation From Pileup For Snp Detection
  I'm interested in generating a fasta file from Ilumina paired reads of my wild type strain. I hav...
• Workflows With Conditional Statements
  Hi all, I was wondering if there is a way to put conditional statements in a Galaxy workflow. T...
• Generating Pileup For Snp Analysis
  I am a new user to Galaxy, and I was hoping someone might be able to help with this small problem...