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Question: empty QUAL field
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gravatar for verakh
3.1 years ago by
verakh • 0
United States
verakh • 0 wrote:

Hi,

I'm trying to analyze polymorphic sites in the individual. After running Naive Variant Caller tool with my database I got VCF file with empty DUAL and FILTER fields. What could be a reason? Thank you.
variant caller • 770 views
ADD COMMENT • link •
modified 3.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.1 years ago by verakh • 0
1
gravatar for Jennifer Hillman Jackson
3.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Would you like to share a link to your history and have our team review? Since you seem to be working at http://usegalaxy.org, this is more direct than attempting to send in parameters and sample data through Biostars.

Generate a share link, paste that into an email to galaxy-bugs@lists.galaxyproject.org, and include a link to this post so we can associate the two. Be certain to leave all inputs and job runs in the analysis as undeleted and that all were executed/exist in the shared history. It would also be good to note the problematic NVC dataset by number so that the correct data is reviewed.

Thanks! Jen, Galaxy team

 
ADD COMMENT • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k

Hello Jen!

Thanks, I figure it out by myself.

Thanks a lot! Vera

ADD REPLY • link written 3.1 years ago by verakh • 0

Glad to know, thanks Vera! Jen

ADD REPLY • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k
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