I am running a local instance of galaxy on a dual-xeon chip MB with 128 GB of ram.
I installed tophat, but when I run my fastq files through it I get "Unable to finish job."
The history turns red, and it says no errors were logged. There appears to be full datasets, but they are still marked as not finishing.
I've googled around, but the solutions seem to be related to hardware limitations (not enough RAM, which I think I'm fine on).
I tried to copy the output, but then I accidentally shut down the processes with ctrl c (windows user :/ ) and it scrolled off the page.
Does anybody know what I can do to fix this?