Question: sequencing adapter trim
0
gravatar for javier.ordonez
3.2 years ago by
United States
javier.ordonez0 wrote:

I'm trying to trim the adapters from sanger/illumina sequences in Galaxy. The adapter selection menu is not giving me any options. Do I need to upload the sequences of the adapter myself? I thought that they were provided automatically.

galaxy • 948 views
ADD COMMENTlink modified 2.9 years ago by rakeshsaraswat69130 • written 3.2 years ago by javier.ordonez0
3
gravatar for rakeshsaraswat691
2.9 years ago by
India
rakeshsaraswat69130 wrote:

U have to provide it....probably u can get it from fastqc's 'overrepresented ' and 'adapter' sequence report.

 

ADD COMMENTlink written 2.9 years ago by rakeshsaraswat69130

See the tool form for how to format the adaptor file. Input format is very important for a successful tool run.

ADD REPLYlink written 2.9 years ago by Jennifer Hillman Jackson25k
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