Question: admin pages trims top directory
0
gravatar for Jeremy Leipzig
2.4 years ago by
United States
Jeremy Leipzig50 wrote:

I am seeing a weird problem where the some of the admin pages are getting the path sent to mako without the top directory.

 

'/cbmi_bioinf/galaxy-python/galaxy-dist/database/compiled_templates/admin/forms/grid.mako.py'

should be

'/home/cbmi_bioinf/galaxy-python/galaxy-dist/database/compiled_templates/admin/forms/grid.mako.py'

File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond
  app_iter = self.application(environ, detect_start_response)
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
  return self.application(environ, start_response)
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py', line 141 in __call__
  return self.app( environ, start_response )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
  return self.application(environ, start_response)
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/framework/base.py', line 133 in __call__
  return self.handle_request( environ, start_response )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/framework/base.py', line 191 in handle_request
  body = method( trans, **kwargs )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/framework/decorators.py', line 87 in decorator
  return func( self, trans, *args, **kwargs )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/base/controllers/admin.py', line 943 in users
  return self.user_list_grid( trans, **kwd )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 307 in __call__
  kwargs=kwargs )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/framework/webapp.py', line 809 in fill_template
  return self.fill_template_mako( filename, **kwargs )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/lib/galaxy/web/framework/webapp.py', line 817 in fill_template_mako
  template = template_lookup.get_template( filename )
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/lookup.py', line 218 in get_template
  return self._load(srcfile, uri)
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/lookup.py', line 283 in _load
  **self.template_args)
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/template.py', line 218 in __init__
  module = self._compile_from_file(path, filename)
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/template.py', line 236 in _compile_from_file
  util.verify_directory(os.path.dirname(path))
File '/home/cbmi_bioinf/galaxy-python/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/util.py', line 76 in verify_directory
  os.makedirs(dir, 0775)
File '/home/cbmi_bioinf/galaxy-python/lib/python2.7/os.py', line 150 in makedirs
  makedirs(head, mode)
File '/home/cbmi_bioinf/galaxy-python/lib/python2.7/os.py', line 150 in makedirs
  makedirs(head, mode)
File '/home/cbmi_bioinf/galaxy-python/lib/python2.7/os.py', line 150 in makedirs
  makedirs(head, mode)
File '/home/cbmi_bioinf/galaxy-python/lib/python2.7/os.py', line 150 in makedirs
  makedirs(head, mode)
File '/home/cbmi_bioinf/galaxy-python/lib/python2.7/os.py', line 150 in makedirs
  makedirs(head, mode)
File '/home/cbmi_bioinf/galaxy-python/lib/python2.7/os.py', line 150 in makedirs
  makedirs(head, mode)
File '/home/cbmi_bioinf/galaxy-python/lib/python2.7/os.py', line 157 in makedirs
  mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/cbmi_bioinf'
software error • 620 views
ADD COMMENTlink modified 2.3 years ago by Bjoern Gruening4.8k • written 2.4 years ago by Jeremy Leipzig50
1

Hello, Are you running the latest master Galaxy build - 15.07? Or another branch? Thanks, Jen

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by Jennifer Hillman Jackson23k

was on release_15.03. upgraded and that seemed to fix the problem

ADD REPLYlink written 2.4 years ago by Jeremy Leipzig50
0
gravatar for Bjoern Gruening
2.3 years ago by
Bjoern Gruening4.8k
Germany
Bjoern Gruening4.8k wrote:

To close this question, it turned out that this problem was fixed in a later release.

ADD COMMENTlink written 2.3 years ago by Bjoern Gruening4.8k
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