I have the hg19 fetched automatically from USCS, I have the genome as well as made the indexed for bowtie. I have mapped some reads to it with bowtie and worked fine.
But when I go to Visualization I do not see it under Reference genome build (dbkey):
(nevertheless I see the Tomato genome which I got fetched from custom sequence)
Data Manager: all_fasta value dbkey name path hg19 hg19 Human Feb. 2009 (GRCh37/hg19) (hg19) /galaxy-central/tool-data/hg19/seq/hg19.fa tomato24 tomato24 Solanum lycopersicon (tomato ITAG2.40) /galaxy-central/tool-data/tomato24/seq/tomato24.fa