In my galaxy.ini I have defined this for tool_config_file :
tool_config_file = config/tool_conf.xml,config/shed_tool_conf.xml,config/lab_tool_conf.xml
At this point, it seems that the tools and section appear in the order they are written in the each file, and we have tool_conf tools first, shed_tool tools then, and at last lab_tool_tools.
Then I want to add a new tool with the toolshed, and I ask Galaxy to create a new section "NGS : Trimming" for example. This new tool and section are written at the end of the shed_tool_conf.xml file. Unfortunately when I look my galaxy instance this section appears after all the tools defined in the lab_tool_conf.xml.
I wonder how the tools and section are ordered within the tool panel. I already tried to modify shed_tool_conf.xml but it didn't work. How can I change the order of the section and tools ?