Question: Cuffdiff-output file gene differential expression-Degust
gravatar for raj_262920
3.7 years ago by
raj_26292020 wrote:

Dear Galaxy team,

Is there a tutorial to show how to load and visualize cuffdiff output files (e.g: gene differential expression testing file) in Degust ? I tried to load the tabular file into Degust but it doesn't work !

Or is there any other way to visualize the results like in Degust ?

Thanks !

rna-seq galaxy • 1.1k views
ADD COMMENTlink modified 3.7 years ago by Jennifer Hillman Jackson25k • written 3.7 years ago by raj_26292020
gravatar for Jennifer Hillman Jackson
3.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Trackster and other statistics/graphing options within Galaxy may do what you want. Statistics tools are in the left tool panel. Access Trackster and graphing tools per-dataset through the small graph icon.

There is a Galaxy wrapper for this tool, but it is just in the Test Tool Shed and appears to be missing certain dependencies. But you could still try it in a local/cloud Galaxy:

And I just googled the tool and found the home page for it. It has all kinds of help, tutorials, input specifications, etc. If you have trouble, contact that team, I am only including it here for reference. The most important thing to note is that CSV formatted data is expected (not tabular).

Best, Jen, Galaxy team


ADD COMMENTlink written 3.7 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 173 users visited in the last hour