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• How to find out how long each tool run on in galaxy
  Hello, How is is possible to find out in Galaxy how long each tool needed to run in the history?  
• How can I get the version of a running instance of galaxy ?
  all is in the title: how can I get the version of a running instance of galaxy ?  
• running samtools faidx
  Is it possible to run samtools faidx in Galaxy? If so how? Thanks for any help Jannetta
• how to male a blast database
  Hi, This is a simple and basic question but am so confused. I have generated my fasta sequence (...
• Is There Size Limit Of Dataset For Running Tophat?
  Hi All, Is there a size limit of dataset for running Tophat at Galaxy? If there is, how many rea...
• time to run cufflinks
  How long does it take to run cufflinks? It has been submitted for 48 hours and still has the gra...
• Galaxy and Nginx Config
  My galaxy and NGINX are running strong. How do you merge these together? How do you add nginx to ...
• Pairwise Alignments
  Hi all, how can I do chaining and netting after running lastz? Thanks, Cheers, Alessandro
• Obtaining a clone of "Main"
  How would one go about getting the current Main instance running locally?
• Galaxy Tophat for Illumina cannot be run, how to set parameters for Tophat for Illumina
  Tophat for Illumina cannot be run and is always 'This job is waiting to run' for three days, is i...
• workflow running in cluster
  Hi all, if i have a workflow of five steps, and i run this workflow on a cluster of 4 nodes, how ...
• Waiting for Cufflinks to run
  Hello, I have been waiting almost 2 weeks for cufflinks to run. How much longer should I wait? W...
• Queue status for bowtie2 run? Over 1 hr 15 min? Doing something wrong?
  Have had a single bowtie2 run on demo database running over an hour. Is this right? How can I get...
• The jobs have started to be running after 12 hours
  Hi, I tried to run a workflow for ChIP-seq analysis, added that in my current history since yeste...
• May I ask how to check the time I used the tool to run
  I want to check the running time of stringtie and other tools, but can't see in the details. So,...
• how to restart the local galaxy server without cancel the running jobs
  I set up a local galaxy server. And I am wondering that whether there is a way to restart the se...
• Run Megablast on Galaxy against local genome
  Hey, Does anyone know how I can run Megablast on Galaxy with a reference genome that is not yet ...
• Estimating Tophat execution run-time
  I was wondering how long it usually takes to map a read on TopHat? It has been over 12 hours and ...
• How long does mapping with bowtie in ChIP-Seq take?
  My request has been running for a long time now, when will it be finished? -amh22
• How jobs execute at Galaxy servers
  My file for pileup has more than 24 hours running job and It still said: "the job is currently ru...