Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Galaxy Tophat for Illumina cannot be run, how to set parameters for Tophat for Illumina
0
gravatar for janicectkwok
4.5 years ago by
janicectkwok • 0
United Kingdom
janicectkwok • 0 wrote:

Tophat for Illumina cannot be run and is always 'This job is waiting to run' for three days, is it normal? 

How do you set the different parameters to check alternative splicing genes and align with mm10 (mouse genome)? 
tophat galaxy • 976 views
ADD COMMENT • link •
modified 4.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.5 years ago by janicectkwok • 0
0
gravatar for Jennifer Hillman Jackson
4.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Both tools map sequences containing splice sites, even at default parameters, but the queue for both is very busy at this time at http://usegalaxy.org. We are aware of the delays this is causing and our administrator is watching progress.

The best strategy at this time is to allow queued jobs to stay queued and allow them to execute. If you stop and restart, this will place the new job at the end of the queue, extending the wait time.

https://wiki.galaxyproject.org/Support#Dataset_status_and_how_jobs_execute

If your work is very urgent, this peak usage time is when some begin to consider a cloud Galaxy: http://usegalaxy.org/cloud

Best, Jen, Galaxy team
ADD COMMENT • link written 4.5 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 172 users visited in the last hour