Question: TopHat run starting then stopping
gravatar for cookseq2
3.4 years ago by
United Kingdom
cookseq20 wrote:

Dear Galaxy Team

I have been having a problem with some tophat runs on my galaxy account. When originally submitted these jobs began to run almost immediately but were grayed out the morning after. It is a paired end tophat alignment on two large datasets (around 17GB) and i know that jobs which are too long or big for the main galaxy server are resubmitted to Stampede but my jobs have been in this grayed out state for over a week and haven't started running again. Is there anything to do to resolve this?

tophat alignment galaxy • 838 views
ADD COMMENTlink modified 3.4 years ago by Martin Čech ♦♦ 4.9k • written 3.4 years ago by cookseq20

The jobs were first submitted on Thursday the 11th of June

ADD REPLYlink written 3.4 years ago by cookseq20

FYI this work has been done on the main public galaxy server, i will attempt to download the datasets and retry the analysis on the galaxy test server and see if the jobs resolve on there.

ADD REPLYlink written 3.4 years ago by cookseq20
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