I could success to convert 10 concatenate files into groomer files except 4 of them! I was waiting and reloading many times but they can not convert to groomer files.I have still 67% using free space.
Could you please help and direct me to go through this problem.
Dear Martin! Actually the first file was big and I did again concatenate my FASTQ files and did run again groomer, but still I have same problem with only size of 6-7 GB files. Previously I had 12 files, all were the same procedure and all of them were successful now I am in bowtie steps, but excepts these four files! I was wondering if was wrong it should be affected with all of them not just with 4 files.
I tryed your way but I can not see concatenate files in file to groom function. Only I can see bowtie files! Sorry again