Question: Error with Operate on Genomics Interval Subtract Tool in Galaxy
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courtneys • 0 wrote:
I keep getting errors when using the Subtract tool under the Operate On Genomic Intervals tools in Galaxy.
Traceback (most recent call last):
File "/nfs/software/galaxy/tools/new_operations/gops_subtract.py", line 23, in <module>
from galaxy.tools.util.galaxyops import *
File "/nfs/software/galaxy/lib/galaxy/tools/__init__.py", line 20, in <module>
from parameters import *
File "/nfs/software/galaxy/lib/galaxy/tools/parameters/__init__.py", line 5, in <module>
from basic import *
File "/nfs/software/galaxy/lib/galaxy/tools/parameters/basic.py", line 1827, in <module>
mod = __import__(module, fromlist=[classname])
File "/nfs/software/galaxy/lib/galaxy/tools/parameters/globus/__init__.py", line 7, in <module>
from .oauth import OAuthAccessToken
File "/nfs/software/galaxy/lib/galaxy/tools/parameters/globus/oauth.py", line 8, in <module>
from galaxy.web.framework.ext.globus import storage
File "/nfs/software/galaxy/lib/galaxy/web/framework/ext/globus/__init__.py", line 1, in <module>
from . import (
File "/nfs/software/galaxy/lib/galaxy/web/framework/ext/globus/middleware/__init__.py", line 3, in <module>
from .auth import UserAuthentication
File "/nfs/software/galaxy/lib/galaxy/web/framework/ext/globus/middleware/auth.py", line 12, in <module>
import nexus
File "/mnt/galaxyTools/tools/pymodules/python2.7/lib/python/nexus_client-0.0.1-py2.7.egg/nexus/__init__.py", line 1, in <module>
from nexus.go_rest_client import GlobusOnlineRestClient
File "/mnt/galaxyTools/tools/pymodules/python2.7/lib/python/nexus_client-0.0.1-py2.7.egg/nexus/go_rest_client.py", line 33, in <module>
import nexus.token_utils as token_utils
File "/mnt/galaxyTools/tools/pymodules/python2.7/lib/python/nexus_client-0.0.1-py2.7.egg/nexus/token_utils.py", line 20, in <module>
import rsa
ImportError: No module named rsa
I am using two BED files that are both in interval format after running MACS, so I don't know what I am doing wrong, and I am not sure how to interpret this error message
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modified 3.6 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
3.6 years ago by
courtneys • 0
