Hello, I use Galaxy regularly, and used TopHat2 earlier without any problem. However, just a day ago, when I was trying to align 'fastq groomed' files with TopHat2, I was getting an error (after a long run): "The Cluster DRM System has terminated this Job". I learnt it's something to do with the limits (time and memory for a run) set by the Galaxy admin? All my 15 'fastq groomed' files eventually returned with the same error message: "The Cluster DRM System has terminated this Job". As I said, I never had problems earlier with aligning my 'fastq groomed' files with TopHat2.
Just to crosscheck, I was able to align all these 15 'fastq groomed' files with Bowtie2, which is actually the core aligner for the TopHat2. So, I was wondering if this has to do with the limits set by the admin. Whom should I talk to?
Our Galaxy runs on Helix clusters. Please advise me. Thanks in advance.