Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: import from genomespace to galaxy local
0
gravatar for raj_262920
3.7 years ago by
raj_262920 • 20
Germany
raj_262920 • 20 wrote:

Hello

Why does the file import from genomespace to galaxy-local takes very long, whereas usegalaxy is just in minutes ?

Is there a way that i can speed this up ?

Thanks
galaxy • 843 views
ADD COMMENT • link •
modified 3.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.7 years ago by raj_262920 • 20
0
gravatar for Jennifer Hillman Jackson
3.7 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Almost certainly this is due to your internet connection speed. The transfer to/from the public Main Galaxy instance at http://usegalaxy.org goes over a production network. We could probably find out the specs for Main, but up/down speeds are always a range and when moving data between two sites the up/down rate of both matters. Not very helpful for your situation since it won't impact you local.

Looking at your own network and the down rate will lead the to answer for file loading on your local (you'll know your own speed and can decide if upgrading is worth it, if an option). Export speeds will be a calculation that includes your up rate. This is true for any data provider access or other external data transfer downloads/uploads. There are many ways to check your network speed - google "speedtest" - your provider may offer a specific tool or there are general ones. 

To my knowledge, local memory would NOT have an impact here, but perhaps that will be amended once others see this post.

Good luck, Jen, Galaxy team

 
ADD COMMENT • link written 3.7 years ago by Jennifer Hillman Jackson ♦ 25k

Hi

So you mean that the upload from genomespace to usegalaxy account doesnot depend on the internet speed but from genomespace to local galaxy does ? right ?

One more question is i cannot login to ftp site using my local galaxy username and password. If it is not possible how do  upload larger files to my local galaxy acc ?

second is , is there a protocol or tutorial that shows how to use CummerRbound after cuff diff ? I downloaded all the 14 cuffdiff outfiles from the analysis in usegalaxy account and uploaded them to my local galaxy and tried to use CummeRBound to these data which shows an error ?

 

Thanks !

ADD REPLY • link written 3.7 years ago by raj_262920 • 20
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 173 users visited in the last hour