I am trying to map the readings between a .sam file and a .gtf file by leveraging on the functionality of HTSeq-Count. However, there are some unexpected result which i presume the problems lies with the format of the files.
.sam file format : https://www.dropbox.com/s/r226fsejimmey3j/sam_data.png?dl=0
.gtf file format : https://www.dropbox.com/s/wfjrgraw8o6r33i/Human_gtf.png?dl=0
- downloaded at (http://asia.ensembl.org/info/data/ftp/index.html?redirect=no)
results of the map result : https://www.dropbox.com/s/ls4atwyrwsri4t8/result_for_cut_L7_1_5_sam.png?dl=0
The result shows that the readings are:
I am really not expecting this result, may I know where am i wrong at?