Question: Is there a tool for displaying statistics result of a gene ?
gravatar for jchen015
3.6 years ago by
jchen01580 wrote:

Dear All

Is there an existing tool which could do a search on existing genes and print out the short reads in the genes?

For example (reference the link here: )




counting_reads • 644 views
ADD COMMENTlink modified 3.6 years ago by Jennifer Hillman Jackson25k • written 3.6 years ago by jchen01580
gravatar for Jennifer Hillman Jackson
3.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:


If you have transcripts with associated gene names mapped to the same reference genome as the short reads, then this is fairly simple to do. A similar example comparison is done in a few of our tutorials. The basic path is to 1.) compare the two sets of coordinates and then 2.) summarize by one of them. If you need to map transcript name to gene name, or merge that with the coordinates, that type of operation is covered too. 

Here are the examples to learn from:

  1. Protocol's 1 & 2

Hope this helps! Jen, Galaxy team

ADD COMMENTlink written 3.6 years ago by Jennifer Hillman Jackson25k
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