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Question: Add tool to public Galaxy?
1
gravatar for burgarl11
3.8 years ago by
burgarl11 • 10
United States
burgarl11 • 10 wrote:

Hello,

I am working on a project to identify novel transcripts and mRNA splicing due to a deletion of an exon in mice. To do this, I wanted to use a tool that is no longer on usegalaxy.org, but is in the Tool Shed (HERE). I was wondering how I could incorporate this into usegalaxy.org, as I am not using my own Galaxy instance. 

Alternatively, if there is a better way to do this, please let me know!

Thanks!
public tool shed galaxy • 854 views
ADD COMMENT • link •
modified 3.8 years ago by Martin Čech ♦♦ 4.9k • written 3.8 years ago by burgarl11 • 10
0
gravatar for Martin Čech
3.8 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

Hi,

tools on usegalaxy.org are highly curated and the tool you mentioned probably won't make it there again. (https://toolshed.g2.bx.psu.edu/view/jjohnson/filter_bed_on_splice_junctions)

This said you can have a look at the list of public Galaxies (https://wiki.galaxyproject.org/PublicGalaxyServers) and see whether some have it installed.

Setting up a Galaxy instance is pretty straight forward so you might want to also consider it: http://getgalaxy.org

Let us know if you need help with anything.
ADD COMMENT • link written 3.8 years ago by Martin Čech ♦♦ 4.9k
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