Question: configure BLAST database to be used by all users on galaxy
0
gravatar for wrf
3.4 years ago by
wrf0
Germany
wrf0 wrote:

Hello,

What is the best way to set up a blast database (say something like nr or swissprot) that all users are able to access?

It seems rather cumbersome that each user would have to import something like nr into their history each time they want to use it.

I already have the BLAST+ package.

Thanks,

nr swissprot blast database galaxy • 1.4k views
ADD COMMENTlink modified 3.4 years ago • written 3.4 years ago by wrf0
2
gravatar for Bjoern Gruening
3.4 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Hi,

you can give the path to a local NR database in a location file. The Galaxy Blast wrappers will look into such files and will offer this option to the users. Please have a look at the documentation: https://github.com/peterjc/galaxy_blast#installation

Cheers,

Bjoern

ADD COMMENTlink written 3.4 years ago by Bjoern Gruening5.1k
0
gravatar for wrf
3.4 years ago by
wrf0
Germany
wrf0 wrote:

Thanks, the instructions worked and configuring the tool-data/blastdb_p.local was fairly straightforward.

ADD COMMENTlink modified 3.4 years ago • written 3.4 years ago by wrf0

Hi, please mark the correct answer as correct, this will help other users in the future.

Thanks,

Bjoern

ADD REPLYlink written 3.4 years ago by Bjoern Gruening5.1k
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