Question: Premature End-Of-File Error in Fastx_Clipper
gravatar for mccoykg
3.4 years ago by
United States
mccoykg80 wrote:

Hi all. I'm having trouble running fastx_clipper, which always returns an error like the following when I try to use it:

zcat: can't stat: /Users/vanopijn/galaxy/database/files/000/dataset_384.dat (/Users/vanopijn/galaxy/database/files/000/dataset_384.dat.Z): No such file or directory fastx_clipper: Premature End-Of-File (filename ='-')

Is this something anyone else has encountered, and do you know if it's a problem with fastx_clipper itself or something indicating a problem with the way my local instance of Galaxy is saving / accessing files? Thank you.

fastx_clipper fastx galaxy • 1.3k views
ADD COMMENTlink written 3.4 years ago by mccoykg80

Haven't seen this before. Have you tested it with multiple input files?

ADD REPLYlink written 3.4 years ago by Bjoern Gruening5.1k

Yep! I've tried lots of different FASTQ files, and they all return the same Premature End-Of-File error.

ADD REPLYlink written 3.4 years ago by mccoykg80
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