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Question: Tools for annotating unknown sequences?
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gravatar for vebaev
7 months ago by
vebaev • 130
vebaev • 130 wrote:

Dear all, what tools are there in the toolshed suitable to annotate 1000 sequences? (is there a way blasting them remotely to NCBI and summarizing like retrieving the top result for each query)?
annotation galaxy local • 211 views
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modified 7 months ago • written 7 months ago by vebaev • 130
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gravatar for Bjoern Gruening
7 months ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

This pretty much depends on what you want to annotate. But we have recently updated a bunch of Genome annotation tools on https://usegalaxy.eu. See here: https://usegalaxy-eu.github.io/posts/2018/02/11/genome-annotation-reloaded/plain.html
ADD COMMENT • link written 7 months ago by Bjoern Gruening ♦ 5.1k
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gravatar for vebaev
7 months ago by
vebaev • 130
vebaev • 130 wrote:

I want to annotate plant sequences of unsequenced genome, in other words, to see my sequences to what they are similar in NCBI.
ADD COMMENT • link written 7 months ago by vebaev • 130
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